Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0702
• Rv0703
• Rv0704
• Rv0705
• Rv0707
• Rv0708
• Rv0709
• Rv0710
• Rv0715
• Rv0717
• Rv0718
• Rv0719

Bicluster Conditions

• H37Rv..7H9.roll.replicate.2.x
• H37Rv..7H9.roll.replicate.3.x
• H37Rv..7H9.roll.replicate.4.x
• H37Rv..Dubos.media.replicate.4
• H37Rv..Sauton.s.media.replicate.1
• H37Rv..Sauton.s.media.replicate.3
• H37Rv..Sauton.s.media.replicate.4
• H37Rv..Youman.media.replicate.3
• H37Rv..Youman.media.replicate.4
• H37Rv..7H9.roll.replicate.1.y
• H37Rv..7H9.roll.replicate.2.y
• H37Rv..7H9.roll.replicate.3.y
• MTB1254.Day.0.rep.1
• MTB1254.Day.0.rep.2
• MTB1254.Day.0.rep.3
• High.iron.wt.vs.low.iron.wt.3a
• MTB1254.vs..MTB1254.rep3
• MTB1254.vs..MTB1254.rep4
• MTB1254.vs..MTB1254.rep5
• H37Rv.Day14.1
• H37Rv.Day14.3
• H37Rv.Day24.1
• H37Rv.Day24.2
• H37Rv.Day24.3
• H37Rv.Day60.1
• H37Rv.Day60.2
• WT.t.6h.WT.t.0h..1
• WT.t.6h.WT.t.0h..2
• WT.t.0h.WT.t.6h..1
• WT.t.0h.WT.t.6h..2
• pH4.8vspH6.8..4h.
• pH4.8vspH6.8..4h.A
• pH4.8vspH6.8..4h.C
• pH4.8vspH6.8..5h.
• pH4.8vspH6.8..5.5h.
• pH4.8vspH6.8..7h.
• pH4.8vspH6.8..11h.
• pH5.2vspH6.8..5h.
• pH5.2vspH6.8..5.5h.
• pH5.2vspH6.8..10.5h.
• pH5.2vspH6.8..16h.
• pH5.6vspH6.8..2h.
• pH5.6vspH6.8..4h.
• pH5.6vspH6.8..5h.
• pH5.6vspH6.8..16h.
• Mtm.0.2ug.mL.vs.ctrl.8h.1.x
• Mtm.0.2ug.mL.vs.ctrl.8h.2.x
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
• AA_30uM_1h_01
• AA_30uM_1h_02
• AA_30uM_1h_03
• AA_30uM_1h_05
• AA_30uM_1h_07
• AA_30uM_24h_03
• AA_30uM_2h_01
• AA_30uM_2h_02
• AA_30uM_2h_05
• AA_30uM_2h_06
• AA_30uM_2h_07
• AA_30uM_30min_01
• AA_30uM_30min_03
• AA_30uM_30min_04
• AA_30uM_30min_06
• AA_30uM_4h_05
• AA_30uM_4h_06
• AA_60uM_24h_01
• AA_60uM_24h_03
• Acetate.3mM.10m.05
• Acetate.3mM.10m.07
• Acetate.3mM.2h.01
• Acetate.3mM.2h.02
• Acetate.3mM.2h.03
• Acetate.3mM.2h.06
• Acetate.3mM.30m.01
• Acetate.3mM.30m.02
• Acetate.3mM.30m.03
• Acetate.3mM.30m.06
• Acetate.3mM.60m.01
• L2A_30uM_1h_01
• L2A_30uM_1h_02
• L2A_30uM_1h_03
• L2A_30uM_1h_04
• L2A_30uM_1h_05
• L2A_30uM_1h_06
• L2A_30uM_1h_07
• L2A_30uM_1h_08
• L2A_30uM_1h_09
• L2A_30uM_2h_02
• L2A_30uM_2h_03
• L2A_30uM_2h_05
• L2A_30uM_30min_01
• L2A_30uM_30min_02
• L2A_30uM_30min_03
• L2A_30uM_30min_04
• L2A_30uM_30min_05
• L2A_30uM_30Min_06
• L2A_30uM_30min_07
• L2A_30uM_4h_03
• OA_50uM_10min_06
• OA_50uM_1h_01
• OA_50uM_1h_02
• OA_50uM_1h_03
• OA_50uM_1h_04
• OA_50uM_1h_05
• OA_50uM_1h_06
• OA_50uM_1h_08
• OA_50uM_1h_09
• OA_50uM_1h_10
• OA_50uM_24h_01
• OA_50uM_24h_02
• OA_50uM_24h_06
• OA_50uM_2h_01
• OA_50uM_2h_02
• OA_50uM_2h_03
• OA_50uM_2h_05
• OA_50uM_2h_06
• OA_50uM_2h_07
• OA_50uM_2h_08
• OA_50uM_2h_10
• OA_50uM_30min_02
• OA_50uM_30min_03
• OA_50uM_30min_04
• OA_50uM_30min_07
• OA_50uM_4h_01
• OA_50uM_4h_05
• OA_50uM_4h_08
• OA_50uM_4h_09
• PA_100uM_24h_01
• PA_100uM_2h_03
• PA_100uM_2h_04
• PA_10uM_10.min_01
• PA_10uM_10min_02
• PA_5.uM_10min_02
• PA_50uM_12h_03
• PA_50uM_12h_05
• PA_50uM_1h_01
• PA_50uM_1h_03
• PA_50uM_1h_04
• PA_50uM_1h_07
• PA_50uM_1h_08
• PA_50uM_1h_09
• PA_50uM_1h_10
• PA_50uM_1h_12
• PA_50uM_24h_01
• PA_50uM_24h_02
• PA_50uM_2h_02
• PA_50uM_2h_03
• PA_50uM_2h_05
• PA_50uM_2h_07
• PA_50uM_30.min_05
• PA_50uM_30.min_06
• PA_50uM_30.min_07
• PA_50uM_30min_01
• PA_50uM_30min_10
• PA_50uM_30min_11
• PA_50uM_3d_02
• PA_50uM_3d_03
• PA_50uM_3d_04
• PA_50uM_3d_05
• PA_50uM_3d_06
• PA_50uM_4h_02
• PA_50uM_4h_03
• PA_50uM_4h_04
• PA_50uM_4h_06
• PA_50uM_8h_02
• PA_50uM_8h_03
• PA_5uM_10.min_01
• Starvation_1254_OA50_12h_03
• Starvation_1254_OA50_24h_03
• Starvation_1254_OA50_24h_04
• Starvation_1254_OA50_3d_01
• Starvation_1254_OA50_3d_02
• Starvation_1254_OA50_3d_04
• Starvation_1254_OA50_5d_02
• Starvation_1254_OA50_5d_03
• Starvation_1254_OA50_6h_01
• Starvation_1254_OA50_6h_02
• Starvation_1254_OA50_6h_03
• Starvation_1254_PA50_24h_01
• Starvation_1254_PA50_24h_02
• Starvation_1254_PA50_24h_03
• Starvation_1254_PA50_24h_04
• Starvation_OA50_24h_01
• Starvation_OA50_24h_02
• Starvation_OA50_24h_03
• Starvation_OA50_6h_03
• CDC1551.Ctrl.vs.H37Rv.rep.1
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
• Mtb.Erdman.strain.20.ppm.CO.rep.1
• Mtb.Erdman.strain.200.ppm.CO.rep.2
• Mtb.Erdman.strain.2000.ppm.CO.rep.1
• Mtb.response.to.pH.5.5..6.replicates.
• Mtb.response.to.pH.6.5..6.replicates.
• BCG.2hr.phagosomal.profile
• BCG.24hr.phagosomal.profile
• M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
• WT.TB.rep3
• Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
• Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
• Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
• Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
• Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
• Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
• Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
• Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
• WT_140mM_NaCl_Rep1
• WT_140mM_NaCl_Rep2
• WT_140mM_NaCl_Rep4
• wild.type..mc.2.6020...biological.rep1
• Mtm.0.2ug.mL.vs.ctrl.8h.1.y
• Mtm.0.2ug.mL.vs.ctrl.8h.2.y
• Mtm.0.2ug.mL.vs.ctrl.12h.1.y
• H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2
• H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs