Bicluster – MTB EGRIN 2.0

ID: 552fa146b744335b89d7e125
# Conditions: 117
# Genes: 28
Residual: 0.47618296771119

Bicluster Motifs

Bicluster Genes

Rv0128
Rv0160c
Rv0182c
Rv0218
Rv0332
Rv0344c
Rv0356c
Rv0368c
Rv0760c
Rv0762c
Rv0764c
Rv0768
Rv0769
Rv0770
Rv0978c
Rv0990c
Rv1024
Rv1118c
Rv1266c
Rv1428c
Rv1722
Rv1739c
Rv1918c
Rv2140c
Rv2220
Rv2928
Rv3063
Rv3528c

Bicluster Conditions

H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.2hr.phagosomal.profile
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.24hrs
Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3
X5ug.mL.CapvsEtOH..6hA
X5ug.mL.KCN.DMSO..6h..2
X30ug.mL.RoxvsEtOH..6h
X10ug.mL.TetvsEtOH..6h
X10ug.mL.TetvsEtOH..6hA
X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.y
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_100uM_30M_01
Tet_20uM_30M_01

Column members cluster 552fa146b744335b89d7e125 Species (TODO)

H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.2hr.phagosomal.profile
MTB.in.Wild.type.macrophages.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.4hrs
MTB.in.Wild.type.macrophages...IFNg.for.24hrs
Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3
X5ug.mL.CapvsEtOH..6hA
X5ug.mL.KCN.DMSO..6h..2
X30ug.mL.RoxvsEtOH..6h
X10ug.mL.TetvsEtOH..6h
X10ug.mL.TetvsEtOH..6hA
X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.y
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_100uM_30M_01
Tet_20uM_30M_01